Protein Info for Atu1066 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 211 TIGR00730: TIGR00730 family protein" amino acids 15 to 191 (177 residues), 188.6 bits, see alignment E=4.1e-60 PF18306: LDcluster4" amino acids 22 to 130 (109 residues), 59.3 bits, see alignment E=3.6e-20 PF03641: Lysine_decarbox" amino acids 58 to 189 (132 residues), 143.9 bits, see alignment E=3.5e-46

Best Hits

Swiss-Prot: 41% identical to LOGH_RHOFA: Cytokinin riboside 5'-monophosphate phosphoribohydrolase (fas6) from Rhodococcus fascians

KEGG orthology group: K06966, (no description) (inferred from 100% identity to atu:Atu1066)

Predicted SEED Role

"Lysine decarboxylase family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D018 at UniProt or InterPro

Protein Sequence (211 amino acids)

>Atu1066 hypothetical protein (Agrobacterium fabrum C58)
MFLPSMTDKNTAIRSICVYCGSQPGRDPAHMEAGRALGKSIAENGIRLVYGGGTKGIMGA
VASGVLSNGGEVTGIIPEFLVDMEATRHSLGQLNELVITKDMHERKHMMFERSDAFVTLP
GGVGTLEEIVEIMTWAQLGRHAKPMVFANINGFWNPMLELVQHMRDQGFIHRAHLLNPLI
VDEVKDIVPAIIDRALAQQNPEGDPSVISRL