Protein Info for Atu1064 in Agrobacterium fabrum C58

Annotation: ABC transporter, nucleotide binding/ATPase protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 628 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 73 to 93 (21 residues), see Phobius details amino acids 158 to 180 (23 residues), see Phobius details amino acids 186 to 205 (20 residues), see Phobius details amino acids 268 to 293 (26 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details PF00664: ABC_membrane" amino acids 39 to 318 (280 residues), 114.6 bits, see alignment E=7.1e-37 PF00005: ABC_tran" amino acids 380 to 529 (150 residues), 117.5 bits, see alignment E=7.2e-38

Best Hits

Swiss-Prot: 49% identical to ATM1_ASPOR: Iron-sulfur clusters transporter atm1, mitochondrial (atm1) from Aspergillus oryzae (strain ATCC 42149 / RIB 40)

KEGG orthology group: K06147, ATP-binding cassette, subfamily B, bacterial (inferred from 100% identity to atu:Atu1064)

Predicted SEED Role

"ABC transporter HlyB/MsbA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D019 at UniProt or InterPro

Protein Sequence (628 amino acids)

>Atu1064 ABC transporter, nucleotide binding/ATPase protein (Agrobacterium fabrum C58)
MATKKKTISADSSNPTQTLINLWPYMWPEGRWDLKMRVIWATVFLIVAKLVLIAVPYFFK
WATDALNGKLDMAGLVPAFLLGAVALVIAYNLTRLIQVGLNQLRDSLFASVGQHAVRQLA
YRTFVHMHRLSLRFHLERKTGGLSRVIERGTKGIETIVRFTILNTAPTFIEFLLTAIIFW
ASYGFSYVLVTVVTVWAYIWFTVRASNWRIGIRRAMNDSDTDANTKAIDSLLNFETVKYF
GNEEMEARRFDVAMERYEKSAISIWTSLGWLNFGQGVIFGIGSTIMMVMSALAVQRGEQT
IGDFVFVNALLLQLSVPLNFIGFVYREIRQGLTDIEQMFDLLEVEAEVTDRPDAKPLAAG
PGAISFRDVHFAYDPERPILKGVSFDVPAGKTVAIVGPSGAGKSTISRLLYRFYDIQEGA
VTIDGQDIRDVTQKSLRSMIGMVPQDTVLFNDTLAYNIRYGRPSATDEELKAAADAAQIS
AFIGKLPDGYATMVGERGLKLSGGEKQRVAIARTILKAPPILILDEATSALDTHTEQEIQ
SALDIVSKNRTTLVIAHRLSTVIHADEIIVLKEGLIAERGTHASLMAHDGLYASMWSRQR
EAIRAEEMLRHVRESDDLGVVDRGEPAH