Protein Info for Atu0985 in Agrobacterium fabrum C58

Annotation: permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details transmembrane" amino acids 43 to 66 (24 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 126 to 144 (19 residues), see Phobius details amino acids 159 to 179 (21 residues), see Phobius details amino acids 191 to 211 (21 residues), see Phobius details amino acids 217 to 236 (20 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 273 to 291 (19 residues), see Phobius details PF00892: EamA" amino acids 15 to 142 (128 residues), 40.1 bits, see alignment E=2.1e-14 amino acids 160 to 291 (132 residues), 33.9 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0985)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJM3 at UniProt or InterPro

Protein Sequence (311 amino acids)

>Atu0985 permease (Agrobacterium fabrum C58)
MNAEPMSPFRGISLKLISVGFFLVMQTCIKAAGDVPAGQITFFRSAFAILPIVVYLAWLH
ALASALHTNNLLGHFKRGFLGILSMVCGFYGLTMLPLPEFIAIGYASPLLAVVFAAFILR
EKVRIYRWSAVFVGMMGVLVILWPKMTLLREGGFAAGEGLGAIAVLCGAALGGLAMIQVR
QLVETEKTPTIVLYFSLTATLLSLISVPLGWSALTMTQAMLLITSGICGGVAQILLTESY
RHAEVSVIAPFEYSSIVFGIAVSYILFGDIPTITMLIGTAIVILAGIFIIFREHQLGLAR
RAARKASTPQG