Protein Info for Atu0960 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 368 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 50 to 69 (20 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 187 to 208 (22 residues), see Phobius details amino acids 219 to 239 (21 residues), see Phobius details amino acids 250 to 270 (21 residues), see Phobius details amino acids 276 to 303 (28 residues), see Phobius details amino acids 315 to 334 (20 residues), see Phobius details amino acids 340 to 361 (22 residues), see Phobius details PF07690: MFS_1" amino acids 4 to 268 (265 residues), 70 bits, see alignment E=9.1e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0960)

Predicted SEED Role

"FIG00364658: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D096 at UniProt or InterPro

Protein Sequence (368 amino acids)

>Atu0960 MFS permease (Agrobacterium fabrum C58)
MLAILGPRIGSELHLSNEVVFLGLTVMMTISALCGPLLGRMLVRHGAAPVLVTGTILFAA
GFGLLASAGGVVSYLLGWAVMGLAGTCGLTTAAHTAVVERVGAESRRSLTLLMVFTGLSG
AVFLPFTAFADQHLGWRGTLIFYGCFQLFVLLPLYLFVLPQRTAPNTDHSLKTADAPKVP
VDTRRAFLLLAAMTTLSAFTAFGLSPLLPLLLVHSGASQALAIQLASVRSVLAITARGLD
FLLGKRGNPFVTCMIGLCLLLVSFVLLIGFSPAMPAFIGFIAFFGFGAGVLTVSRAVLPL
AVFSPTQYGLQAARISLPQNLAIAVAPVIFTMALDRGGVGAMLGIASILIGLSVLLLILL
WRTVRQGA