Protein Info for Atu0916 in Agrobacterium fabrum C58

Annotation: transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF05443: ROS_MUCR" amino acids 13 to 135 (123 residues), 173.3 bits, see alignment E=1e-55

Best Hits

Swiss-Prot: 99% identical to ROS_RHIRD: Transcriptional regulatory protein ros (ros) from Rhizobium radiobacter

KEGG orthology group: None (inferred from 99% identity to agr:AGROH133_04765)

Predicted SEED Role

"transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CJQ7 at UniProt or InterPro

Protein Sequence (142 amino acids)

>Atu0916 transcriptional regulator (Agrobacterium fabrum C58)
MTETAYGNAQDLLVELTADIVAAYVSNHVVPVTELPGLISDVHTALSGTSAPASVAVNVE
KQKPAVSVRKSVQDDHIVCLECGGSFKSLKRHLTTHHSMTPEEYREKWDLPVDYPMVAPA
YAEARSRLAKEMGLGQRRKASR