Protein Info for Atu0902 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 386 transmembrane" amino acids 45 to 66 (22 residues), see Phobius details amino acids 72 to 90 (19 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 179 to 205 (27 residues), see Phobius details amino acids 238 to 263 (26 residues), see Phobius details amino acids 269 to 296 (28 residues), see Phobius details amino acids 304 to 325 (22 residues), see Phobius details amino acids 340 to 369 (30 residues), see Phobius details PF01594: AI-2E_transport" amino acids 54 to 371 (318 residues), 107.6 bits, see alignment E=3.8e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0902)

Predicted SEED Role

"transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0E5 at UniProt or InterPro

Protein Sequence (386 amino acids)

>Atu0902 hypothetical protein (Agrobacterium fabrum C58)
MNKNAKPDLAGTAALALDKGDPLLTPASVSQRDDARSQQPLGREALDVFVAWSIIGIFLI
MSMAVIHELSMILMPVVMAVVVGMILGISAEKLASYGIPGAGVALILSTLVAAVIFFVVN
SLIDPVSQLATEGPALIERSIDRFLPYVQNLRWLNISAATFSMGSMSMESLISRSGEIIT
LLGANVTPAIVQGLIFLAALLMFLYSRLRLRKALIMVFPARHQRLRTIRIIGSVEKVLGT
YFATASLIYAALGVTMIVIAYVGGLSMPLLWGLFAFLSSFVPFLGITLMTISLTIAGIIA
HDNMILALLPAGVFFTIHLLMENLAFPAVVGRNMEINPFLVFVMIIFWTWMWGAAGAMLA
LPLSLIAMTVTRELFPSRRVVPKLPD