Protein Info for Atu0884 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 79 to 100 (22 residues), see Phobius details amino acids 112 to 132 (21 residues), see Phobius details amino acids 148 to 166 (19 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 207 to 230 (24 residues), see Phobius details TIGR02458: cobalt transporter subunit CbtA (proposed)" amino acids 3 to 232 (230 residues), 333.1 bits, see alignment E=4.2e-104 PF09490: CbtA" amino acids 4 to 230 (227 residues), 172.8 bits, see alignment E=5.7e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0884)

Predicted SEED Role

"Predicted cobalt transporter CbtA" in subsystem Coenzyme B12 biosynthesis or Transport of Nickel and Cobalt

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0G1 at UniProt or InterPro

Protein Sequence (236 amino acids)

>Atu0884 hypothetical protein (Agrobacterium fabrum C58)
MSFFRNIVFTAILVGILGGFAVSAMQAFGTTPLILQAETFESAGEAPHSHDAPAPGAAVP
AHEHNDEAWAPADGFERTAYTVAANVLTAIGYALVLTGLISLRGTNTGWREGLLWGVAGF
AAVMLAPMIGLPPELPGSPAAALEARQIWWLATVAATAGGIALIAFRREPWAVLLALVLI
VAPHVIGAPLPPEGEHALAPLPLERQFIVAATITSFVFWALIGTLSAFFLKRFQQA