Protein Info for Atu0845 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 34 to 41 (8 residues), see Phobius details PF03734: YkuD" amino acids 118 to 255 (138 residues), 78.2 bits, see alignment E=5.3e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0845)

Predicted SEED Role

"PROTEIN YBIS PRECURSOR"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0J6 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Atu0845 hypothetical protein (Agrobacterium fabrum C58)
MYSGDIAVRNVGQSGLMTSTDTDLSRRTFLSLLGISSASLLAGCASSGTGEAIRQQASSI
GSDFRQMFSSGVSDAELAVMYGSVEDGGYVIPAVPYQKIDRRYYRQRVVDPTGERPGTVV
VDTRSRFLYVVEQGGSAMRYGVGIGRDGFAWSGEGVIQWRQKWPKWTPPDEMVARQPELV
KYSSKNGGMPPGLKNPLGARALYIFQNGKDTLYRLHGSPEWNSIGKAVSSGCVRLMNQDV
IDLYDRVPQKARVVVWQ