Protein Info for Atu0838 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 507 transmembrane" amino acids 17 to 37 (21 residues), see Phobius details amino acids 54 to 72 (19 residues), see Phobius details amino acids 84 to 103 (20 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 144 to 162 (19 residues), see Phobius details amino acids 172 to 192 (21 residues), see Phobius details amino acids 203 to 222 (20 residues), see Phobius details amino acids 228 to 251 (24 residues), see Phobius details amino acids 272 to 295 (24 residues), see Phobius details amino acids 307 to 327 (21 residues), see Phobius details amino acids 338 to 357 (20 residues), see Phobius details amino acids 363 to 383 (21 residues), see Phobius details amino acids 400 to 422 (23 residues), see Phobius details amino acids 468 to 488 (21 residues), see Phobius details PF07690: MFS_1" amino acids 23 to 415 (393 residues), 162.1 bits, see alignment E=1.8e-51 PF00083: Sugar_tr" amino acids 52 to 190 (139 residues), 32.4 bits, see alignment E=5.1e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0838)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0K3 at UniProt or InterPro

Protein Sequence (507 amino acids)

>Atu0838 MFS permease (Agrobacterium fabrum C58)
MSTAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSA
YLLATSAVMPVYGKLGDLFGRKYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGG
GIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPILGGTMSDLFGWRSIFLINLPL
GIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGII
AFAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTT
TGLSPSHAGLFFIAVTGGIVMGSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAG
TPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAASGAVTLTRMGGAAIAISVYG
AIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAI
GLAAALMLKPVRLPAAVEAKPAEAAGE