Protein Info for Atu0832 in Agrobacterium fabrum C58

Annotation: chloride channel protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 20 to 39 (20 residues), see Phobius details amino acids 57 to 79 (23 residues), see Phobius details amino acids 106 to 128 (23 residues), see Phobius details amino acids 157 to 181 (25 residues), see Phobius details amino acids 193 to 216 (24 residues), see Phobius details amino acids 230 to 250 (21 residues), see Phobius details amino acids 271 to 292 (22 residues), see Phobius details amino acids 318 to 340 (23 residues), see Phobius details amino acids 349 to 372 (24 residues), see Phobius details amino acids 391 to 410 (20 residues), see Phobius details PF00654: Voltage_CLC" amino acids 68 to 407 (340 residues), 280 bits, see alignment E=1.5e-87

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0832)

Predicted SEED Role

"Chloride channel protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0K8 at UniProt or InterPro

Protein Sequence (438 amino acids)

>Atu0832 chloride channel protein (Agrobacterium fabrum C58)
MLRRSRVVWGSWRVWRPRAVFWVGAIAVGIISVAFAWAADRAQHLFSAVTSAGEWAFLLP
LLITPLGFTLCAWLAISVFPNAGGSGIPQAIAARHLRDDADRSRLLSLKLAFGKVVLTVA
GLLSGASIGREGPTVQVGASIMLQAARWGGMAQAKGLILAGSAAGIAAAFNTPLAGIVFA
IEEMSKTYESRANGLVLTAVILSGLASLALVGSYTYFGTSSVMAKTMMDWLLVLICGVGG
GAFGALFSAGALRLSARIRRFAQTMPLKRMLAVAAACGLASAVIGIATGGATFGTGYEQA
RAAIEGEAAPAFFFIEKLAATFLAMMSGIPGGIFAPSLSVGAGFGSTMAGLLGTSIGLGA
IVGMAGYFAGVVQAPMTAFVIILEMTGNHEGVIPIMVAAMLGYLTSRLFSREPLYHGLSR
VFIAQSIRARRAAQASET