Protein Info for Atu0804 in Agrobacterium fabrum C58

Annotation: proton/glutamate transport protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 454 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 61 to 84 (24 residues), see Phobius details amino acids 96 to 121 (26 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 215 to 234 (20 residues), see Phobius details amino acids 247 to 270 (24 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 358 to 384 (27 residues), see Phobius details PF00375: SDF" amino acids 22 to 427 (406 residues), 338.8 bits, see alignment E=2.3e-105

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0804)

Predicted SEED Role

"Proton/glutamate symport protein @ Sodium/glutamate symport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0M5 at UniProt or InterPro

Protein Sequence (454 amino acids)

>Atu0804 proton/glutamate transport protein (Agrobacterium fabrum C58)
MSQATTSAGSSGSKPFYRNFGFQVLIAMVIGLLLGLVARNIGPDAAGNPNWLSVTLQTIG
SIFVQLLRALVPPLIFTAIVASIANLKNLSNAAKLVWQTLLWFAITALIAVVIGIVLGLV
IQPGVNTAIANTAAAAPSSTGSWLDFLKGLVPANVFGLEASTKITNGAGSTSLNFNVLQL
LVVSIAFGVAALKAGKAAEPFLAFNQSLLAIVRKILWWVIRLTPIGTIGLLGRAVDQYGW
TTLSQLGWYAAAVYIGLALVLFVVYPALLLAHGLKPSRFFAGAWPAIQLAFVSRSSIGTL
PVTETVTEKSLGVPREYAAFSVPLGATTKMDGCAAIYPAISAIFIAQFFQVPLGIQEYVL
IVFVSVLGSAATAGLTGAVVMLTLTLSTLGLPLEGVGLLLAIDPILDMGRTAVNVAGQAL
VPTIVAKREGILNEAVYNNAKDIDTLDDREAVTA