Protein Info for Atu0765 in Agrobacterium fabrum C58

Annotation: TldD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 471 PF01523: PmbA_TldD_1st" amino acids 31 to 88 (58 residues), 39.6 bits, see alignment 7.1e-14 PF19290: PmbA_TldD_2nd" amino acids 118 to 227 (110 residues), 63.3 bits, see alignment E=4.1e-21 PF19289: PmbA_TldD_3rd" amino acids 235 to 468 (234 residues), 223.2 bits, see alignment E=3.6e-70

Best Hits

KEGG orthology group: K03568, TldD protein (inferred from 100% identity to atu:Atu0765)

Predicted SEED Role

"TldD protein, part of TldE/TldD proteolytic complex"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0Q6 at UniProt or InterPro

Protein Sequence (471 amino acids)

>Atu0765 TldD (Agrobacterium fabrum C58)
MTDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGF
GLRAVAGETVGYAHAGELSEGALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIG
SPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVDILRADGHRVSDIRPMTRINI
SVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVV
LGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTI
DDEGTPSAYNVLIENGRLVGYMQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSG
DKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAYLIENGKIGAPVKGAMLIGNG
PDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA