Protein Info for Atu0714 in Agrobacterium fabrum C58

Annotation: ATP synthase A chain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 249 transmembrane" amino acids 29 to 48 (20 residues), see Phobius details amino acids 82 to 108 (27 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 152 to 170 (19 residues), see Phobius details amino acids 189 to 214 (26 residues), see Phobius details amino acids 220 to 242 (23 residues), see Phobius details TIGR01131: ATP synthase F0, A subunit" amino acids 7 to 244 (238 residues), 220.3 bits, see alignment E=1.6e-69 PF00119: ATP-synt_A" amino acids 31 to 242 (212 residues), 213.4 bits, see alignment E=1.9e-67

Best Hits

Swiss-Prot: 100% identical to ATP6_AGRFC: ATP synthase subunit a (atpB) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02108, F-type H+-transporting ATPase subunit a [EC: 3.6.3.14] (inferred from 99% identity to agr:AGROH133_04297)

Predicted SEED Role

"ATP synthase F0 sector subunit a"

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK03 at UniProt or InterPro

Protein Sequence (249 amino acids)

>Atu0714 ATP synthase A chain (Agrobacterium fabrum C58)
MANDPTHQFLVQPIIPIEIGGVDFSFTNASLFMVATVAAASGFLYFATSNRGLIPTRMQS
VAEMSYEFIASMLREGAGKKGMVFFPFVFSLFMFVLTANLLGMFPYFFTVTSQIIVTFAL
ACLVIGTVIVYGFYKHGLHFFGIFAPSGVPKALLPLVASIEMISFLSRPISLSVRLFANM
LAGHITLKVFAGFVASMGALGALGVGGAVLPLIMTVAMTALEFLVAFLQAYVFAVLTCMY
LNDAVHGGH