Protein Info for Atu0700 in Agrobacterium fabrum C58

Annotation: two component sensor kinase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 PF13188: PAS_8" amino acids 155 to 207 (53 residues), 17 bits, see alignment 1.1e-06 TIGR00229: PAS domain S-box protein" amino acids 156 to 267 (112 residues), 23.1 bits, see alignment E=3.2e-09 PF08448: PAS_4" amino acids 160 to 266 (107 residues), 54 bits, see alignment E=4.5e-18 PF00072: Response_reg" amino acids 431 to 538 (108 residues), 67 bits, see alignment E=4e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0700)

Predicted SEED Role

"Two component sensor kinase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D0W5 at UniProt or InterPro

Protein Sequence (555 amino acids)

>Atu0700 two component sensor kinase (Agrobacterium fabrum C58)
MQLSDLASSGAGVHTVMLDALCDALGAAIVVYDRNDHIIFASRKLLSFFPLEEAVASPGA
RLRDYLSALYDCYLLEAESLSSNARQLGREEWIGERLALHWKERSEKTERLKGERFLRFV
MNRLPSGLGISVVADISEQKKREEQWRLDLERVQLIEDILDNLPFPVLVKDRNLAYAAVN
KAACTMVETSAESILGRTVFDLHSRKVARRIDAADRMVLDSGTPSIIPERVRRLNGEEVL
TITRKQRVGRPGRYFLVTTMEDVTALATIDANGMPVIPSLEHVPFVASTYGKDEETDGRS
GLLKSKAVLIVSENTRFAEAAGQRLAAGGMDHAAVMSEDEQRAFIDVAASAGVGIDVVVV
DAQMSVACLDIAAAHGLPVVTIEEEEIDASLMHYLAVGLKSSPKEKAEDEDWEIMTDDLP
EMLRTGSVCDILLVEDNRVNQIVFSQILEGLGLSWRLATSGEEALRLFVEQSPSVVLLDT
TLGDIDGFEVAQRMRDLAGDKHIPIVGVITHAFEGDLDKCLASGMDDMLLKPVSPDMVEA
VFLRLIGKDVLRLQA