Protein Info for Atu0653 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 812 PF06748: DUF1217" amino acids 61 to 128 (68 residues), 67.1 bits, see alignment E=1e-22 amino acids 375 to 503 (129 residues), 45.6 bits, see alignment E=4.4e-16 amino acids 492 to 613 (122 residues), 47.5 bits, see alignment E=1.1e-16 amino acids 613 to 765 (153 residues), 171 bits, see alignment E=9.5e-55

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0653)

Predicted SEED Role

"Flagellar basal-body rod protein FlgF" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D105 at UniProt or InterPro

Protein Sequence (812 amino acids)

>Atu0653 hypothetical protein (Agrobacterium fabrum C58)
MVSTFLSYDLINRDMKSSISRVSQQGLVERQTKYYKENIGNVKSVDEFLGNYQLYSYAMD
AFGLGEMTYAKAFMKKVLESDLNDQNSFANKLTDERYREFAASFNFTASTKTVQTDAQLD
KMIGLYDTSITNLNGSLAEETRYYKAIIGTVTNADQLLRNDRTRAYIFQVFNIDEKTYSY
AHIKGLMTSDVNDPNSYINQNYGAAYNDAVEKLTMKGNIELHAQVTARITAIDTDLAGTG
LTAEERTKLEAEKVTRQNQLTQLEAVLPPKDQWDAKLAAIKAEQTTLSNAVTQYNKMAQI
ANAFEFKNDGTVDAGGAQTADKLKAITDSYIGSAPRVTPTVATLNRDYFESKIGSITTVE
ELMSDARLLNYVRTAFDLNDLTIVPATIKNILTSDLSDPNNYIATMGKNDKRYLALKNAF
NFLPDGTLAAGTTPQTTTQTATTTSGYMTHYNDADDAADAKALSLFKSSISKVTSVNDFL
GTNAVYTYALRAVGLDPAKVNISDIQRVLTSDLQDKKSYVYTLKDDRYVKLAELFNFTKD
GSVGSPILAQSEIELQTMSADYIKKKSAFGTEKDKEAAQTEAKYFSGEMQKIKTLSEFLA
NDRLTKFAMESLGIDPKSVTKEQLQKIFTSNLDDKNSYVNKEMDPVFRRLVTAFNFDTEG
KLLHEDRSAIQTRRGLYETLDNYLTQTLESQAGEENAGVRLALYFKRMAAGTTSYYSILA
DTAIQNFIKTTFGIPDELGNANVDTQVAMMKKYFDIKDFQDPDKVKKLIARFTIMYDNKQ
NVADPIMTLFNGSGSAGISGDTLLAVATLRAR