Protein Info for Atu0643 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 645 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 236 to 254 (19 residues), see Phobius details amino acids 387 to 408 (22 residues), see Phobius details amino acids 414 to 436 (23 residues), see Phobius details amino acids 449 to 473 (25 residues), see Phobius details amino acids 484 to 504 (21 residues), see Phobius details PF09972: DUF2207" amino acids 27 to 214 (188 residues), 123.5 bits, see alignment E=1.1e-39 PF20990: DUF2207_C" amino acids 273 to 448 (176 residues), 69.4 bits, see alignment E=4.1e-23 amino acids 457 to 565 (109 residues), 83.1 bits, see alignment E=2.6e-27

Best Hits

KEGG orthology group: None (inferred from 98% identity to atu:Atu0643)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D114 at UniProt or InterPro

Protein Sequence (645 amino acids)

>Atu0643 hypothetical protein (Agrobacterium fabrum C58)
MKTIAARLLALFVFLGVAFPAFAEEFIRSYHSVVEVAADGKLTVTETITARAEGQNIKRG
IFRDFPLYALDANNRRTRVDFNVVSVERDGAPENWRTENIDGGIRIYTGSAEHFLPTGEH
IFQITYTTARQIRFFSDYDELTWNVTGNGWQFPMGEISATITLPRGVKATDTAVFTGPLG
AKGRDARILSEGNEVFFATTRPFSVGEGMTVAVKLPKGAIAAPDTSQEAGWWLRDNLAIL
LSGGGLFVVLLYYLRAWFAVGRDPAKGVVVPRWDAPEGLSPALVNYVDNRGFSGAGWTAL
SASALDLAVKGYVVLEDLKNSIVIRRTQKQAGAELPSGQKTLLSSIGSPGETLTIDKAHG
TEVEKVGKQFRAAIEKEHRGKYYRSNAGYIVFGILLSIAIIVATLVFGDLDENAIVAVMV
FGFFGFFFSVLSIGIGRQFSRGASLSKRIGGIVMLAFAGFVAFSVIGGIATQILLDVTHD
TKSLALAAIGGIVLTNALFLFLMGAPTPLGRKLMDGIEGLRTYLTLAEKDRMNMAGAPAM
SPQHFETLLPYAVALGVEKPWSRTFETWLATAAAGAAVASYAPGWYAGSNYGSFGDRIGG
FSTSMASTIASTIPQPVSSSGSSFSGGGGGGSSGSGGGGGGGGGW