Protein Info for Atu0621 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 465 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 40 to 62 (23 residues), see Phobius details amino acids 71 to 93 (23 residues), see Phobius details amino acids 99 to 117 (19 residues), see Phobius details amino acids 127 to 148 (22 residues), see Phobius details amino acids 157 to 180 (24 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 220 to 237 (18 residues), see Phobius details amino acids 258 to 280 (23 residues), see Phobius details amino acids 292 to 312 (21 residues), see Phobius details amino acids 324 to 342 (19 residues), see Phobius details amino acids 348 to 368 (21 residues), see Phobius details amino acids 389 to 410 (22 residues), see Phobius details amino acids 424 to 443 (20 residues), see Phobius details PF07690: MFS_1" amino acids 9 to 229 (221 residues), 136.1 bits, see alignment E=7e-44 amino acids 263 to 440 (178 residues), 38.6 bits, see alignment E=3.2e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0621)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK48 at UniProt or InterPro

Protein Sequence (465 amino acids)

>Atu0621 MFS permease (Agrobacterium fabrum C58)
MNRIIPLILAVALFMEQMDSTVIATSLPAIAKDLHVGPITLKLALTAYMVALAIFIPISG
WMADKYGAKKIFRIAIGVFVVGSICCAVSSSVFEFVLSRFLQGMGGAMMTPVGRLVLLRT
TKRSELVSAMALLTIPGLVGPLTGPPIGGFITTYFSWHWIFLINVPIGIIGIWLSTIFLP
EIETTNPPPMDGKGFILSGIAASGVVFGVSVVSLPALPPAIGIASTVIGFICGFLYMRHA
ARHPAPILDFRIFQNATFRAASVGGTVFRISTGAIPFLMPLMLQIGFGLNPFQSGMITFA
GAIGAITTKFMAKRVFAATGFRSTLIGAGIVGAFTTLANSFFTPETPYPLIMIFLVTAGF
ARSFFFTGSNALSYSDIEDSQASQATSMASVLQQISLALGVAFAASILEVSSMMSGTHLQ
LADFHIAFTIVALVSLFAIVPIIRMDAQAGAAVSGHRGKVSQPAE