Protein Info for Atu0603 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF12831: FAD_oxidored" amino acids 7 to 162 (156 residues), 29 bits, see alignment E=2.4e-10 PF07992: Pyr_redox_2" amino acids 7 to 166 (160 residues), 27.7 bits, see alignment E=6.4e-10 PF03486: HI0933_like" amino acids 7 to 392 (386 residues), 304 bits, see alignment E=2.8e-94 PF00890: FAD_binding_2" amino acids 7 to 87 (81 residues), 32 bits, see alignment E=2.8e-11 TIGR00275: flavoprotein, HI0933 family" amino acids 8 to 391 (384 residues), 393.3 bits, see alignment E=5.6e-122 PF22780: HI0933_like_1st" amino acids 190 to 339 (150 residues), 145 bits, see alignment E=6.9e-46

Best Hits

Swiss-Prot: 53% identical to YHIN_ECOLI: Uncharacterized protein YhiN (yhiN) from Escherichia coli (strain K12)

KEGG orthology group: K07007, (no description) (inferred from 100% identity to atu:Atu0603)

Predicted SEED Role

"FIG00363834: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D145 at UniProt or InterPro

Protein Sequence (394 amino acids)

>Atu0603 hypothetical protein (Agrobacterium fabrum C58)
MMTEKCDVLILGAGAAGMMGAIRAGKRGRSVIILDHARAPGEKIRISGGGRCNFTNIHAG
PKNYLSSNPHFAKSALARYTPHDFIALVEKHRIAWHEKTLGQLFCDDSAKDIIRMLLAEM
QAVNAKLRLETSVSAVTHDGGRFRVTTSGGVIEAESLVVATGGKSIPKMGATGFAYQIAE
QFGLKLIEPRPGLVPLTLDPAALEKLSPLAGVAVPAEVSHGKTSFEEALLFTHRGLSGPS
ILQISSYWREGDAIRLKLEPARDIVSLLRQAKQKNGRQSAQTALSEILPKRLAQHVVEQT
GITGNLADMSEKVLAKLAAQVQDWQIKPAGSEGYRTAEVTLGGVDTTGLDSRSMAAKSVP
GLYFIGECVDVTGWLGGYNFQWAWASGQAAGEFA