Protein Info for Atu0592 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 306 transmembrane" amino acids 25 to 52 (28 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 172 to 194 (23 residues), see Phobius details amino acids 224 to 247 (24 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details PF00528: BPD_transp_1" amino acids 95 to 292 (198 residues), 48.9 bits, see alignment E=3.4e-17

Best Hits

Swiss-Prot: 74% identical to AGLF_RHIME: Alpha-glucoside transport system permease protein AglF (aglF) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K10233, alpha-glucoside transport system permease protein (inferred from 100% identity to atu:Atu0592)

Predicted SEED Role

"ABC alpha-glucoside transporter, inner membrane subunit AglF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D155 at UniProt or InterPro

Protein Sequence (306 amino acids)

>Atu0592 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MIFPVRSGDVIHASRNLNRRAAVRPWLFIGPALILLLVYLVYPVIATLILSFYDRTGAEF
VGLANYRWAFFDAGFRQSIFNNILWLAVVPAACTFFGLVIAVMTDRIWWGNIAKSIVFMP
MAISFVGASVIWKFIYEYRAEGQVQIGLLNAVVEFFGGSPEVWISMPFWNNFFLMVILIW
IQTGFAMVILSAALRGIPEETIEAAVIDGANGWQIFWKIMVPQIWGTIAVVWTTITILVL
KVFDIVLTMTNGQWNTMVLANLMFDWMFRGGGDSGRSAVIALIIMAAVTPIMVWNIRQAN
REMEGR