Protein Info for Atu0579 in Agrobacterium fabrum C58

Annotation: hook formation protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 PF03963: FlgD" amino acids 13 to 78 (66 residues), 85 bits, see alignment E=1.7e-28

Best Hits

KEGG orthology group: K02389, flagellar basal-body rod modification protein FlgD (inferred from 100% identity to atu:Atu0579)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK64 at UniProt or InterPro

Protein Sequence (157 amino acids)

>Atu0579 hook formation protein (Agrobacterium fabrum C58)
MAVDAVNSAAANPWANAGASSSDKNAASLNYDSFLKLLIAQMKNQDPTSPMDAGQQMSQL
ASFSQVEQTIKTNTHLKSMLQAEALTRASDLVGKTVMSADDKVTGVVKEVQVFSDGIVAV
TEAGDKVLLQAGVVFSNGPITTKSDETTADSNNSAGS