Protein Info for Atu0578 in Agrobacterium fabrum C58

Annotation: FlbT post-transcriptional regulator of flagellin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 149 PF07378: FlbT" amino acids 5 to 128 (124 residues), 143.6 bits, see alignment E=1.6e-46

Best Hits

Swiss-Prot: 100% identical to FLBT_AGRFC: Probable flagellum biosynthesis repressor protein FlbT (flbT) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K06601, flagellar protein FlbT (inferred from 100% identity to atu:Atu0578)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UHV1 at UniProt or InterPro

Protein Sequence (149 amino acids)

>Atu0578 FlbT post-transcriptional regulator of flagellin (Agrobacterium fabrum C58)
MKSTLRISLKSGEKIFINGAVLRVDRKVALEFLNDVTFLLENHVLQPDQATTPLRQLYFI
AQMILINPEGREQSTNMFRKSVSMLLNCFQHDEILAELKRIDGLVASGKAFEALKAIRGL
YTIEEKILSNQEMTPATIEQIRKEIAPWR