Protein Info for Atu0567 in Agrobacterium fabrum C58

Annotation: flagellin protein FlaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details PF00669: Flagellin_N" amino acids 4 to 137 (134 residues), 110.4 bits, see alignment E=7.5e-36 PF00700: Flagellin_C" amino acids 345 to 429 (85 residues), 71.6 bits, see alignment E=5.4e-24

Best Hits

KEGG orthology group: K02406, flagellin (inferred from 100% identity to atu:Atu0567)

Predicted SEED Role

"Flagellin protein FlaA" in subsystem Flagellum or Flagellum in Campylobacter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D179 at UniProt or InterPro

Protein Sequence (430 amino acids)

>Atu0567 flagellin protein FlaD (Agrobacterium fabrum C58)
MTSILTNAAAMAALQTLRMIDKNLETTQARVSSGFRVETAADNAAYWSIATTMRSDNSAL
SAVQDALGLGAAKVDTAYDALESTIEVVKQIKAKLVAAYGVGADRGKIQDEIKQLQEQLK
SISESASFSGENWLQASISNSGTPPVAESITKKVVASFTRTGSGNVGVTTVDYTLDSSTV
LFDLSGGKLGILDKNAVFVSKTETEVMQTSTTAGKTSQAGYVVEKLSDAQIGALNATTTD
TNTDPNLYSNGTDNYLRLAENVWVKATATNPSSGGTTVSPAYRDTGSTDWFYDVSAGTAS
ANRSLGFSVSTLDLGNLDVVAAAMGGFAGGGTTYTGADAIDMMMSFVDKQLEAMTSTASS
LGSLQSRISMQENFVSSLMDVIDKGVGRLVDADMNEESTRLKALQTQQQLGIQALSIANA
NAENILQLFK