Protein Info for Atu0561 in Agrobacterium fabrum C58

Annotation: flagellar motor switch protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 PF01052: FliMN_C" amino acids 234 to 306 (73 residues), 49.9 bits, see alignment E=1.2e-17

Best Hits

Swiss-Prot: 100% identical to FLIM_AGRFC: Flagellar motor switch protein FliM (fliM) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02416, flagellar motor switch protein FliM (inferred from 100% identity to atu:Atu0561)

Predicted SEED Role

"Flagellar motor switch protein FliM" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q44457 at UniProt or InterPro

Protein Sequence (319 amino acids)

>Atu0561 flagellar motor switch protein (Agrobacterium fabrum C58)
MAKAAAQKASAPTIDTALLAKLTGGLTDRKTIAKIGADIGHLYSEFLPDTFHSETGIAID
VEYIGSESGLMTDLIANVGQNVAVADCSLRNWCPNFMMAVGNGFVIALMERMLGASPDSI
GDPDERNLSHIELDLAAMVLGRIAGVLRSGVNAPGGFEATIDPPFNANGKSAFDEMIAGL
YGVTIRMKIDIGKVSSEFSLIVPQRPLLKTSIVAPKASAQALKKQEEWMDMISQQVKRSQ
VTLEARIKLETLTLRTISRLVAGDVIPFQDLKQDDIGVEVSANGSKLYNCEFGKSGDRYM
VRVKNNVSTDDEILRHLMG