Protein Info for Atu0547 in Agrobacterium fabrum C58

Annotation: flagellar protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 166 transmembrane" amino acids 14 to 37 (24 residues), see Phobius details PF03748: FliL" amino acids 77 to 165 (89 residues), 48.3 bits, see alignment E=6.3e-17

Best Hits

KEGG orthology group: K02415, flagellar FliL protein (inferred from 100% identity to atu:Atu0547)

Predicted SEED Role

"Flagellar biosynthesis protein FliL" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D186 at UniProt or InterPro

Protein Sequence (166 amino acids)

>Atu0547 flagellar protein (Agrobacterium fabrum C58)
MENEQAEGKKKSSPLVMTIAGVVILTLLGAGGGWLVGGMIAPKVAATEAHATAAAGGHGE
KKGEGLDKIDAEANGIVQLDPITTNLAYPSTNWVRLEVALMFKGPVEVGLAEDIHQDIMA
YVRTVSLQQLEGPRGFQYLKDDIQERVDLRSQGRVSKVMFRTFVIE