Protein Info for Atu0507 in Agrobacterium fabrum C58

Annotation: potassium efflux system protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 114 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 45 to 66 (22 residues), see Phobius details amino acids 73 to 95 (23 residues), see Phobius details PF03334: PhaG_MnhG_YufB" amino acids 18 to 98 (81 residues), 72.3 bits, see alignment E=1.5e-24 TIGR01300: monovalent cation/proton antiporter, MnhG/PhaG subunit" amino acids 18 to 107 (90 residues), 89.1 bits, see alignment E=9.4e-30

Best Hits

Swiss-Prot: 53% identical to PHAG_RHIME: Probable K(+)/H(+) antiporter subunit G (phaG) from Rhizobium meliloti (strain 1021)

KEGG orthology group: K05564, multicomponent K+:H+ antiporter subunit G (inferred from 100% identity to atu:Atu0507)

Predicted SEED Role

"Na(+) H(+) antiporter subunit G" in subsystem Sodium Hydrogen Antiporter

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CK80 at UniProt or InterPro

Protein Sequence (114 amino acids)

>Atu0507 potassium efflux system protein (Agrobacterium fabrum C58)
MNNAAEFPLWAAILVAFFVLLGASLTLTGTIGFAKLNSFYERLHAPTLGTSWGTGGIVMA
SIIYFSVSGDRFAFHEIFIGIFMTVTTPVSLMLLGRAALYRDRAEQNSDNREHL