Protein Info for Atu0499 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1248 transmembrane" amino acids 832 to 852 (21 residues), see Phobius details PF08238: Sel1" amino acids 985 to 1018 (34 residues), 24.7 bits, see alignment (E = 2.8e-09) amino acids 1020 to 1055 (36 residues), 32.1 bits, see alignment (E = 1.3e-11) amino acids 1058 to 1090 (33 residues), 8.8 bits, see alignment (E = 0.00029) amino acids 1093 to 1127 (35 residues), 31.3 bits, see alignment (E = 2.3e-11) PF01471: PG_binding_1" amino acids 1190 to 1243 (54 residues), 45.8 bits, see alignment (E = 5.6e-16)

Best Hits

KEGG orthology group: K13582, localization factor PodJL (inferred from 100% identity to atu:Atu0499)

Predicted SEED Role

"TPR repeat, SEL1 subfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1C3 at UniProt or InterPro

Protein Sequence (1248 amino acids)

>Atu0499 hypothetical protein (Agrobacterium fabrum C58)
MNGLRSKTQQPSDRSSLDALNRTIEGLEARIEGLMSQKFPREPRAASSQPEPKNEAYAAP
REPRAAVTPPQLDPVNEIRQRQRLLEASFQRPQEPVARPERTITRPLAPEYGSRDTQQTA
APAPRARAIPPYQEQQRNDAALQEIAQALVNLRHELKHDIAEGVAREAQGLRAEIRNIRA
VAEDQQFIGDLRDDIARLAGSIDQLGNLASPDAYGLRNEFEDLRLTIDQLAREDSVHRIE
SRWNNVEDTLRGFDAASLQDEIVSLAYRLDDIKTQLGGMSNNPAVRVLEEKLITIASAVE
QLGKHMQPNEAAFTEQFSGLDQRLDEISRAIAATGTRANAQATDNALAQRLETRLNGLAE
QLGDINRLAAIKPEPAPDLTARLEALSGKIDELSTARDAAQLHDRLDQLSLLLERSQRPT
QQAELTSFLSDISRKIDALDHGAINDGLAERLDLLSRRIEDLDYRYSQPQPASGLSDSAF
SRLEERLGTIAARLDETAHAAPADSRALASLENQIAHLSTLISQPVQVQAAGISPELDVR
MAAIEDYMASNDEYIIEAARQAAEAVLDAYTRNNLSAGANLADMTMLTDLATDLRSLEAL
SRNTEERTHRTFEALHETLVQIAGRLDNLDSAPAYRQDAPRNVAQHMVAASREDAAMPAA
VFPADGYIAEEQAILDDVSENDATAIVPPAAAKPAKAERKSLLAGLTKRFKTSTAKPAKA
KEEPVSASSARTQVEPAPSLDPIDVLPAGQENELLEPGSGAPDIKKILERVRASQVAGAG
KAADAEGRTDFIAAARRAAQAAAMETSPEKLDTGKKSRKADTSALSRYRRPLLLGIGAIL
LAMMAMPLVKTLIGGAEAPAPVIEQKTDQGPVSALPETDDKAVTIPSGLAIDPEQAASAD
SIENAAPAQNIIDNRTIGGAPLPDEPPVADVPAVDPAKSDTVAQNEGPKPTEVATTTIPA
QDTIVVPAGIEPASLAEAAAKGDTQALFEIAARYTDGRGVTADRAEAAKWYKMAADRGLA
PAQYRLANLYEKANGVERNLVEAKRYYTLAAEQGNAGAMHNLAVLLASDAAGQPDFATSA
QWFIKASELGVRDSQFNLAILYARGSGVKQDIEESYKWFAIAAKDGDADAAQKRDEVAGA
MSPQQLQSAKAKVDAWKVKPLSDDANSVNPPEEWAGKEGVKTASVDMEKAIRNIQAILNK
NGFDAGQPDGKLGKNTVTAIRDFQKSVGQTPDGRITNDLVTALLARNK