Protein Info for Atu0490 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 transmembrane" amino acids 15 to 33 (19 residues), see Phobius details amino acids 45 to 68 (24 residues), see Phobius details amino acids 76 to 95 (20 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 176 to 193 (18 residues), see Phobius details PF02588: YitT_membrane" amino acids 17 to 190 (174 residues), 112.4 bits, see alignment E=9.8e-37

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0490)

Predicted SEED Role

"Transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1D1 at UniProt or InterPro

Protein Sequence (203 amino acids)

>Atu0490 hypothetical protein (Agrobacterium fabrum C58)
MWSSDPARHAPVEDVQGIVTGAIVSALGFYLLAKVGLLTGGTAGVAFLLHYAFGISFGLL
FFLVNLPFYYLSFRRLGLAFSCKTFIAIGLVSVLTEVEARWMVIDSINPLWAALLGGLLL
GYGLLALYRHRASLGGIGILAIYIQDRFGIRAGLIQLAFDACVMLCAFLVIDPATVAYSI
VGAFVLNIFLAINHRSDRYIVVR