Protein Info for Atu0481 in Agrobacterium fabrum C58

Annotation: exopolysaccharide production protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 431 transmembrane" amino acids 26 to 43 (18 residues), see Phobius details amino acids 55 to 74 (20 residues), see Phobius details amino acids 85 to 103 (19 residues), see Phobius details amino acids 109 to 128 (20 residues), see Phobius details amino acids 139 to 158 (20 residues), see Phobius details amino acids 180 to 199 (20 residues), see Phobius details amino acids 204 to 222 (19 residues), see Phobius details amino acids 228 to 244 (17 residues), see Phobius details amino acids 251 to 271 (21 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details amino acids 385 to 406 (22 residues), see Phobius details amino acids 408 to 409 (2 residues), see Phobius details PF04932: Wzy_C" amino acids 212 to 356 (145 residues), 56.2 bits, see alignment E=1.7e-19

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0481)

Predicted SEED Role

"Exopolysaccharide production protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1D9 at UniProt or InterPro

Protein Sequence (431 amino acids)

>Atu0481 exopolysaccharide production protein (Agrobacterium fabrum C58)
MPRLADTQPITAQDSAISLAGGRRDAFFFVATMLYIWISVAPFENLAAPPVPRAAANQLT
GLVIALILAVFALRHRLTGLLLRPRLPILLLFFWLVICSVIGTQPGTSLQRLVFTALLCF
ITSVLVVMPRDRRQFDRMMAIFALILLALCYLGVIFLRSRSVHQPFDLDEKALAGDWRGI
FNHKNAAAPAMIILFMIGLYLRNAWSTLGGIAITLLAGFFLWKTNGKTAAMLLPVTLALV
WIMERHAHRTLLMIGGLLAFLNIVAVGSTYFPSIQNFVESLGIDSTFTGRTDIWRLSFDT
FAQSPIFGQGFQAFWTSDRLLSQADIAGTWAVTAFHAHNGYVESLLNGGLPAFILTVIWL
VIIPANDFHTAVDKGTDPGLTRLFARIWVYALLSSCLESNFFTGTGPIWSSLLIAVYCLR
HQAHDILEQGQ