Protein Info for Atu0480 in Agrobacterium fabrum C58

Annotation: polysaccharide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 44 (18 residues), see Phobius details amino acids 65 to 88 (24 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 216 to 233 (18 residues), see Phobius details amino acids 276 to 297 (22 residues), see Phobius details amino acids 309 to 331 (23 residues), see Phobius details amino acids 343 to 362 (20 residues), see Phobius details amino acids 368 to 387 (20 residues), see Phobius details PF01943: Polysacc_synt" amino acids 5 to 238 (234 residues), 47.1 bits, see alignment E=2.3e-16 PF13440: Polysacc_synt_3" amino acids 12 to 305 (294 residues), 37.3 bits, see alignment E=2e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0480)

Predicted SEED Role

"STRUCTURAL ELEMENTS; Cell Exterior; surface polysaccharides/antigens"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1E0 at UniProt or InterPro

Protein Sequence (400 amino acids)

>Atu0480 polysaccharide biosynthesis protein (Agrobacterium fabrum C58)
MSSAAQLLTFALLARHLGVEQFALYASITAVTNLGVQICGIGSQESLIRRVAQDRSMFPV
MLGHSYLLSAATGVVLTIIGMVTIPVFFPTSETLLHTLITTFLILFTNLVLLKVISLSTQ
SFIAHSNFASANKLEVMFAVTRTIAAVVACLIFKVETVEAWALWNLAAHAVAAVISVKAT
GRLGRPIFRIVREEIRIGILFSTQFLFKAVRGNADILVLGAIASAEVLGSYSIARRILDS
SYLSVEALNRLIYPGSASAALQGITKTIGRAYNVLKAALFIATGSALVIFIIAPFLPLLF
GDEYVSLPIITRVLCWVVLPMAVAATALEALGASGRQDIRAKIWNSGNLLGSVIVAFFTW
SFSISGTIGSYFLVETAIAAAVWIALLRLRRDEQVFAPAK