Protein Info for Atu0369 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 transmembrane" amino acids 39 to 60 (22 residues), see Phobius details amino acids 74 to 100 (27 residues), see Phobius details amino acids 112 to 134 (23 residues), see Phobius details amino acids 140 to 157 (18 residues), see Phobius details amino acids 169 to 189 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0369)

Predicted SEED Role

"FIG00983692: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKC5 at UniProt or InterPro

Protein Sequence (198 amino acids)

>Atu0369 hypothetical protein (Agrobacterium fabrum C58)
MPTASEVRLYLTGLWLLLLGDHNGARYLDLSERGMWRSFYSALWCLPAMLVSWLWLRAAF
LASVPPGAETGFLFFFRLAMVEAICWIVPLLLIGMLLYAFGAREKFAPLVTTVNWLSLPF
SYAYAVLILIAFFLPPLQGLIAILWLALLLSLVFAFSRIVRFFIRDQSLLVSAVVMTLLV
PAMLLSEALQRFLGVYPA