Protein Info for Atu0358 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 PF02130: YbeY" amino acids 20 to 154 (135 residues), 132.7 bits, see alignment E=3.6e-43 TIGR00043: rRNA maturation RNase YbeY" amino acids 50 to 156 (107 residues), 133 bits, see alignment E=2.4e-43

Best Hits

Swiss-Prot: 100% identical to YBEY_AGRFC: Endoribonuclease YbeY (ybeY) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K07042, probable rRNA maturation factor (inferred from 100% identity to atu:Atu0358)

Predicted SEED Role

"Metal-dependent hydrolase YbeY, involved in rRNA and/or ribosome maturation and assembly"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UID9 at UniProt or InterPro

Protein Sequence (168 amino acids)

>Atu0358 hypothetical protein (Agrobacterium fabrum C58)
MAALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDEN
IREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHL
THLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPYAGQEPL