Protein Info for Atu0273 in Agrobacterium fabrum C58

Annotation: regulator protein pecM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 287 transmembrane" amino acids 7 to 26 (20 residues), see Phobius details amino acids 38 to 56 (19 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 94 to 114 (21 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 177 to 197 (21 residues), see Phobius details amino acids 209 to 227 (19 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 263 to 280 (18 residues), see Phobius details PF00892: EamA" amino acids 12 to 137 (126 residues), 51.5 bits, see alignment E=6.9e-18 amino acids 147 to 279 (133 residues), 77.3 bits, see alignment E=7.1e-26

Best Hits

Swiss-Prot: 48% identical to PECM_DICD3: Protein PecM (pecM) from Dickeya dadantii (strain 3937)

KEGG orthology group: None (inferred from 100% identity to atu:Atu0273)

Predicted SEED Role

"Permease of the drug/metabolite transporter (DMT) superfamily" in subsystem Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKG9 at UniProt or InterPro

Protein Sequence (287 amino acids)

>Atu0273 regulator protein pecM (Agrobacterium fabrum C58)
MKKNMTYAADVLVTALAPAIWGTTYFVTTEFLPQGYPLHVAMLRALPAGILLLLLVRKLP
QGIWWPRSFILGALNFSFFWAMLFVSAYRLPGGVAATVGAVQPLIVIGLSRLFLSTPVRP
LAIGAGFLGIAGVALLVLTPGAALDGIGVAAGLAGAVSMAFGTVLTRKWRPPVSNLTFTA
WQLTAGGILLLPVAYALEPALPAPTAVNVMGMAYLGLIGAALTYLLWFRGLARIEPSAAA
SLGFLSPVVATLLGWLALGQSLAPAQIAGFIAVLFSIWLSQRSQLPR