Protein Info for Atu0255 in Agrobacterium fabrum C58

Annotation: 50S ribosomal protein L35

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 67 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF01632: Ribosomal_L35p" amino acids 2 to 60 (59 residues), 71.2 bits, see alignment E=4e-24 TIGR00001: ribosomal protein bL35" amino acids 2 to 64 (63 residues), 70.1 bits, see alignment E=7.6e-24

Best Hits

Swiss-Prot: 100% identical to RL35_AGRFC: 50S ribosomal protein L35 (rpmI) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K02916, large subunit ribosomal protein L35 (inferred from 100% identity to atu:Atu0255)

Predicted SEED Role

"LSU ribosomal protein L35p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UIN8 at UniProt or InterPro

Protein Sequence (67 amino acids)

>Atu0255 50S ribosomal protein L35 (Agrobacterium fabrum C58)
MPKMKTKSAAKKRFKITATGKVVAAAAGKRHGMIKRTNKFIRDARGTMVLAEADGKKVVK
NYLPNGL