Protein Info for Atu0253 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 PF12697: Abhydrolase_6" amino acids 53 to 249 (197 residues), 51.8 bits, see alignment E=7.2e-17 PF00561: Abhydrolase_1" amino acids 54 to 147 (94 residues), 30.3 bits, see alignment E=1.4e-10 PF12146: Hydrolase_4" amino acids 59 to 148 (90 residues), 37.9 bits, see alignment E=5.2e-13 PF07859: Abhydrolase_3" amino acids 87 to 158 (72 residues), 29.3 bits, see alignment E=3e-10 PF05728: UPF0227" amino acids 88 to 260 (173 residues), 22.5 bits, see alignment E=3.7e-08 PF05990: DUF900" amino acids 89 to 156 (68 residues), 20.8 bits, see alignment E=9.3e-08 PF00326: Peptidase_S9" amino acids 100 to 254 (155 residues), 26 bits, see alignment E=2.5e-09

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0253)

Predicted SEED Role

"2-hydroxymuconic semialdehyde hydrolase (EC 3.1.1.-)" (EC 3.1.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.1.1.-

Use Curated BLAST to search for 3.1.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1U7 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Atu0253 hypothetical protein (Agrobacterium fabrum C58)
MTEQAAEFLHIGMGEDARNIAFLHRPATSQPDAPTLVWLGGYRSDMTGTKAVELDRFAAE
NGLACLRLDYSGHGASGGDFNKGTISRWLEEALAVVRAKASSRVVLVGSSMGGWIALRMI
EELRKSGGAPSVAGLVLIAPAPDFTQELIEPSLSDAEKTSLAERGYFEEHSDYSPEPNIF
TRALMEDGKQNRVLTGIITTGCPVHVLQGMRDPDVPYQHALKLIEHLPSDDVVLTLIRDG
DHRLSRPQDIERMLAAVKALAI