Protein Info for Atu0251 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 327 transmembrane" amino acids 184 to 205 (22 residues), see Phobius details amino acids 211 to 230 (20 residues), see Phobius details amino acids 251 to 270 (20 residues), see Phobius details amino acids 276 to 294 (19 residues), see Phobius details amino acids 306 to 325 (20 residues), see Phobius details PF02915: Rubrerythrin" amino acids 20 to 156 (137 residues), 133.7 bits, see alignment E=5.9e-43 PF01988: VIT1" amino acids 244 to 325 (82 residues), 31.8 bits, see alignment E=1.3e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0251)

Predicted SEED Role

"Hypothetical transmembrane iron-regulated protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKH9 at UniProt or InterPro

Protein Sequence (327 amino acids)

>Atu0251 hypothetical protein (Agrobacterium fabrum C58)
MFRSLFSLSKRPFSSLGEQEILALAISSEEDDSRIYRSYADHLRAQYPQSAKVFEDMAEV
EQQHRNVLIDMHRRRFGETIPLIRREHVRGFYERTPDWLVKNLSLEKIRAQAELMEAQAI
RFYDEAVKRTTDASTRKLLGDLAEAERGHEDIAQMLEEKHLDEGGRTEEEETAKRQFLLT
YVQPGLAGLMDGSVSTLAPIFAAAFATQDTWQTFLIGLSASVGAGISMGFTEAAHDDGKL
SGRGSPLKRGLASGIMTAVGGLGHALPYLIPHFWTATAIAAIVVFVELWAIAFIQNRFME
TPFLRAVFQVVLGGSLVLAAGIIIGNA