Protein Info for Atu0200 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 348 signal peptide" amino acids 7 to 11 (5 residues), see Phobius details amino acids 28 to 28 (1 residues), see Phobius details amino acids 33 to 33 (1 residues), see Phobius details transmembrane" amino acids 12 to 27 (16 residues), see Phobius details amino acids 34 to 53 (20 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 84 to 106 (23 residues), see Phobius details amino acids 141 to 162 (22 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details amino acids 230 to 248 (19 residues), see Phobius details amino acids 260 to 281 (22 residues), see Phobius details amino acids 293 to 310 (18 residues), see Phobius details amino acids 317 to 338 (22 residues), see Phobius details TIGR03082: membrane protein AbrB duplication" amino acids 10 to 165 (156 residues), 126.5 bits, see alignment E=4.2e-41 amino acids 184 to 337 (154 residues), 126.7 bits, see alignment E=3.6e-41 PF05145: AbrB" amino acids 33 to 337 (305 residues), 257.5 bits, see alignment E=7.4e-81

Best Hits

KEGG orthology group: K07120, (no description) (inferred from 100% identity to atu:Atu0200)

Predicted SEED Role

"FIG00363789: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q7D1Z3 at UniProt or InterPro

Protein Sequence (348 amino acids)

>Atu0200 hypothetical protein (Agrobacterium fabrum C58)
MIIKPEFHTFALTALVGSMGALLASLLHIPAPFLSGPALAVTITGLAGVKLGIPAFIRNA
CFVVVGISMGTSVTPSVIDAAKTWPLSFIVVLVAVVIMLYVAYWILHYGFGYDRTTAMLG
ASPGHLSYIISLGAETKSDLATVSIVQSVRVLALTLSVPLIVEYFDLVSTEPLITNPPMG
FFTLALTIAASLLTGWLFLRWKFPAALLLGGVAISIGTHITGLTEGGVPSWLSLPVYVLI
GCLIGTRFSNVSLMEVRKGFLAGFVVTIAVMVIAGTIAWLISRVTGVPLNAVMIAYAPGG
LETMAAMAVMMHADTAYVGSHHVIRLLFLSVLMPLVMGKDARKRDGDT