Protein Info for Atu0158 in Agrobacterium fabrum C58

Annotation: ABC transporter, membrane spanning protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 257 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 68 to 92 (25 residues), see Phobius details amino acids 104 to 124 (21 residues), see Phobius details amino acids 130 to 150 (21 residues), see Phobius details amino acids 192 to 214 (23 residues), see Phobius details amino acids 221 to 244 (24 residues), see Phobius details PF00528: BPD_transp_1" amino acids 82 to 251 (170 residues), 84.2 bits, see alignment E=4.9e-28

Best Hits

KEGG orthology group: K02050, sulfonate/nitrate/taurine transport system permease protein (inferred from 100% identity to atu:Atu0158)

Predicted SEED Role

"ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKN1 at UniProt or InterPro

Protein Sequence (257 amino acids)

>Atu0158 ABC transporter, membrane spanning protein (Agrobacterium fabrum C58)
MQPLQPIKNSTRIILGILFFVLFFSAWGFATLGGFVSPTFLADPITMLKDGIYLLTDQGF
AGDIGMTIWRVVGGFVLASLIAVPVGIAMGAYKPIEALLEPFVSFARYLPASAFVPLLIL
WAGIGEMQKLLVIFIGAVFQIILMVAVAVAGTRRDLVEAAYTLGAKDRGVVRRVLIPANA
PDIAEILRLVLGWAWTYVIVAELIGASSGIGYMIINSQALMATGQIIFGIIVIGVIGLIS
DFAFKSLNRKLFAWRLA