Protein Info for Atu0143 in Agrobacterium fabrum C58

Annotation: MFS permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 440 transmembrane" amino acids 44 to 63 (20 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 103 to 122 (20 residues), see Phobius details amino acids 135 to 157 (23 residues), see Phobius details amino acids 169 to 192 (24 residues), see Phobius details amino acids 202 to 222 (21 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details amino acids 293 to 314 (22 residues), see Phobius details amino acids 322 to 341 (20 residues), see Phobius details amino acids 348 to 371 (24 residues), see Phobius details amino acids 383 to 405 (23 residues), see Phobius details amino acids 411 to 431 (21 residues), see Phobius details PF00083: Sugar_tr" amino acids 34 to 251 (218 residues), 55.9 bits, see alignment E=3.6e-19 PF07690: MFS_1" amino acids 44 to 399 (356 residues), 53.4 bits, see alignment E=2e-18

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0143)

Predicted SEED Role

"MFS permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKN3 at UniProt or InterPro

Protein Sequence (440 amino acids)

>Atu0143 MFS permease (Agrobacterium fabrum C58)
MSYTNAAPSFGQAPEANGAGPTSVDPDRITIAVILARMTEFFDFFIYAIASALVFPHVFF
SFVDPLTATLYSFAVFSLAFIARPIGSLIFLQIDRKFGRAVKLMAALFTLCGSTMAISFL
PSYDEAGMLAPCLLAAFRIGQGLGLGGAWDGLVSLLAMNAPQKQRGWYAMMPQIGAAMGF
GLASAFFIVFVTQLSNAEFLAWGWRFPFFVALALNVLALFARLRMIVTPEFQAMLEQHEL
EPRPMFRMLRSQFPVVLTGAFVPLASFALFHLVTVFPLSWVSLNTSQRVSDFLFVQFVSA
IICGGMIVVSGILADRIGRRKLLAIAAALIGLFSLVAPVLLSSGDIGRYLFVLIGFSLLG
LSFGQAGGALASRFSREYRYTGASLTSDISWLIGAGFAPLVALGFSSKFGLFAVGIYLMS
GAVCTLVALWFSRTLEMPSE