Protein Info for Atu0104 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 152 PF04073: tRNA_edit" amino acids 26 to 140 (115 residues), 92.4 bits, see alignment E=1.1e-30

Best Hits

Swiss-Prot: 45% identical to YWHH_BACSU: Uncharacterized protein YwhH (ywhH) from Bacillus subtilis (strain 168)

KEGG orthology group: None (inferred from 100% identity to atu:Atu0104)

Predicted SEED Role

"tRNA proofreading protein STM4549"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKP6 at UniProt or InterPro

Protein Sequence (152 amino acids)

>Atu0104 hypothetical protein (Agrobacterium fabrum C58)
MSIESVRAFFIEKSPGVTVIETEGSSATVALAAEAHGVDPDQIAKTICLKAGDTILLVVA
AGTRRLDNRKFRDHFGAKPRMLGAEEVVAVTSHPIGGVCPFGLPSALPVFCDISLKNYQE
VVPAAGATNAAVKISPDVMVELTGAEWVDVCQ