Protein Info for Atu0090 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 198 PF02576: RimP_N" amino acids 23 to 95 (73 residues), 92.2 bits, see alignment E=2.1e-30 PF17384: DUF150_C" amino acids 98 to 168 (71 residues), 76.9 bits, see alignment E=1.1e-25

Best Hits

Swiss-Prot: 100% identical to RIMP_AGRFC: Ribosome maturation factor RimP (rimP) from Agrobacterium fabrum (strain C58 / ATCC 33970)

KEGG orthology group: K09748, ribosome maturation factor RimP (inferred from 100% identity to atu:Atu0090)

Predicted SEED Role

"FIG000325: clustered with transcription termination protein NusA"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q8UJ48 at UniProt or InterPro

Protein Sequence (198 amino acids)

>Atu0090 hypothetical protein (Agrobacterium fabrum C58)
MADTAQEPRLITETGIDQRIAEIIEPVLTGMGYLLVRVRLSNQNGMTLQVMAEREDGTMN
VQDCEAISMAISPVLDVEDPVEKAYHLEVSSPGIDRPMVRKTDFTRWQGHLVKVETSILV
ENRKRFRGKIVEVDADSFKLERDQIAYGEEPTVVVPFNALSDAKLILTDDLIRDALRADK
AAKAAAANQNDENEADED