Protein Info for Atu0088 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 233 PF04296: YlxR" amino acids 27 to 97 (71 residues), 81.8 bits, see alignment E=1.3e-27

Best Hits

KEGG orthology group: K07742, hypothetical protein (inferred from 100% identity to atu:Atu0088)

Predicted SEED Role

"COG2740: Predicted nucleic-acid-binding protein implicated in transcription termination / ribosomal protein L7Ae family protein" in subsystem NusA-TFII Cluster or Transcription factors bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKQ6 at UniProt or InterPro

Protein Sequence (233 amino acids)

>Atu0088 hypothetical protein (Agrobacterium fabrum C58)
MTSQAHEPDDLPETDDDGRIKGDVNGRMCIVTRQSGSPDELIRFVAGPDGNVVPDLKRQL
PGRGCWVTPERALIEKAIAKKLFARALKRDVKAGPELLALLDRLMAQQLAGMMNMARKAG
QFISGATKVDAAVRSGNAIAVFHATDAAADGVRKLDQARKAWALGSDAGNEIPSFRLSSE
AEMDELMGQNAFIHACALAGQAGEGVVKRATMLEQYRLGGRSQAERDAARTEQ