Protein Info for Atu0024 in Agrobacterium fabrum C58

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1061 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details TIGR02786: double-strand break repair protein AddB" amino acids 9 to 1051 (1043 residues), 1423.4 bits, see alignment E=0 PF12705: PDDEXK_1" amino acids 778 to 1015 (238 residues), 81.7 bits, see alignment E=4.1e-27

Best Hits

KEGG orthology group: None (inferred from 100% identity to atu:Atu0024)

Predicted SEED Role

"FIG041266: ATP-dependent nuclease subunit B"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A9CKS9 at UniProt or InterPro

Protein Sequence (1061 amino acids)

>Atu0024 hypothetical protein (Agrobacterium fabrum C58)
MTLTHHAKRVLTIAAGTPFLKTLAETLCDGRLTAGYRYDPTDPLSLASVTIYVPTRRSAR
VLRSEFVDLLGGRSAILPLIRPLGETDDDSGFFDIENPEIMDLAPPISGTGRQIELARLI
LAWRNSLPDAIRAIHSDSPLVAPASPADAIWLARALGEVIDAMDTEEKDWEALQHLDTGE
HAQWWQLTADFLKIASVFWPARLAELNRSSAGRHRNAILRAEADRLANLPDTGPIIVAGS
TGSIPAAADLIAAVAALPQGTVVLPGLDLAMPEEQWQAIIEDPTDPSSRTHPQYGLYMLL
QKLGMSRDEVVQIGALDRDLEKRAAVFSAALAPAKSTSDWNGWREGRDPGFFDEAFAAAT
LIEAANQREEATAIAVALRLALEAPGPGRPSQAALITPDRGLARRVATELQRFGIEADDS
AGTPLSATPQAGLTQLALEAILRPGDPVPIISLLKHPLARFGLSGDAFTKASKALELIAL
RGGRVETEIGNLEVVLDAQLLAQRDNRHPPAWRVALPEGSVDAARDLARRIAIATEPLGS
AFIRRDRSGRAFTDKLPLSDWAGRTGRVIEAICADDSNDLAALWSGEAGDKLSSLFAELM
ESGDILDADGPQWIDIFAALVAGESIKPRSMRHPRIFIFGALEARLQSVDTVVIGGLNEG
LWPGQTANNPFLSRSMKTAIGLEPPERRIGQLAHDFEMANGTRQIFYTRALRQGSTPAVA
SRWLQRLLALGGENFAEQLRKRGETYRHWAGLMDESIDQETAKRPAPKPPADLQPKSYSF
SEVGRLRRDPYAIYARRILKLDPLDPFNRDPNAADRGTLYHGIIERYSREGHIPGTPASL
EAMQRILDDCFDAENLPVHVDVIWRPRFAAVARAFIDWEKERHPSIRRSFFEARAGQEIA
EAGIRLTGVADRIDIKTSGQADIIDYKTGLAPSVNQARALLDPQLALEAAALMRGAFRET
GSPTPENLIYVRLRPGDRFFADQVNNEHSNRSGKRPPKSAIELATESIDQLAKFVRSLRD
GENGFASRLVPEEQQSYGGEYDHLARVSEWSTAEPGDGDDD