Protein Info for AMB_RS23835 in Magnetospirillum magneticum AMB-1

Annotation: VWA domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 776 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 371 to 391 (21 residues), see Phobius details PF00092: VWA" amino acids 31 to 138 (108 residues), 25 bits, see alignment E=2e-09 PF13519: VWA_2" amino acids 32 to 135 (104 residues), 27.4 bits, see alignment E=4.4e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (776 amino acids)

>AMB_RS23835 VWA domain-containing protein (Magnetospirillum magneticum AMB-1)
MVIRGGGIAVVFYALAAIFVAGSANARQDADIIVLFDKSGSVNRHDPKMASKAWVQTFLK
TFSNSYKINVVAFDEELHNLLSLDTDEGIDHSDINASFGKLKADGLATDLELPFQYLVKH
ARPATKLAIIISDGEPEVWDVNRGYLSQKVQKDKRYDDLNWDFYEIWQGQGQGQGQERSD
IGNESIVDLYNSVGQLYNERNVDIIDHLMPRVARAIGARLIIWDISGNSQYLQDWAAASG
AKYLPLRVALGENPSVQLLTAMGVLQQKSSEIVREPLPADHKNRAVEALGSISEINGTLE
GSASHDSEPLREAKTLLGSQQPQAPQVQLQPNASVEAAPPPPHEVQLISPQPSIEKQLPD
PRKSQDRPTSAPIMVLVALVVVGGVGFYVFFQRRRKLAGQKAAQAARQSAVVTAAASHPP
QQKVEAPVIRTKPPVIPVPGARAAAMIPALKSSESLGQTLPPVPNATILPSADPIPEQPE
VGTALLAPAMEAPEEVLPSEPTAVVYLPRSVDLLEIEAEDESEVSLSDHMVAEFIDGKVQ
EIISEAELLRQKLLTRTSGVIDGEFQFLLFVAAPLGSIEVYWQCRDGYERHGSAIDVALQ
GLSVGVNAKDIQSITKVQCKAHGVTLHIEHANVMAYGPDSTVIGFFQFHDNINSWMNWIE
VVSRIAKGTEHDECIVRVDVDPNGNRNESSSYSSPNYLSGAWPVVPGRSARDRDSARIED
VQKELVSPTPVRSDVPVQGLTTGIADLVGVAAGSLSAQGAAFFRRIMKSRNAIFKK