Protein Info for AMB_RS23715 in Magnetospirillum magneticum AMB-1

Annotation: nodulation protein noeE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 433 PF00685: Sulfotransfer_1" amino acids 8 to 204 (197 residues), 32.9 bits, see alignment E=4.5e-12 PF13469: Sulfotransfer_3" amino acids 9 to 204 (196 residues), 98 bits, see alignment E=9.7e-32

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb1061)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W8G0 at UniProt or InterPro

Protein Sequence (433 amino acids)

>AMB_RS23715 nodulation protein noeE (Magnetospirillum magneticum AMB-1)
MSGITSRDPVFLLGIPRSGTTLLARLLTNHPEVMAPPEPWIMLAIEQLGCVDRRHPADCQ
LVGQATDEFLDDSLRIEVARAAARAAYDGHLQRAGKSVFVDKTPRYHLIVPFLRRVFPSA
NFLVLLRNPLAIAASFHDTWNIDVAKILREGRDHPAAFDVVQGLGVLADLVATDDPRVHS
IRYEDLVRAPNTVMPQVFDFLGLDPLAVPENSMATIPFAPPSALGDQKINKEKVVHDLSI
DMWRESLSDADKEAIADALGADTLRRLGYGKLYDEFGSPGQADPDRISGERLASRWHDLA
LVRGRGRPLGDHLQANSAAALHNDSDLAQNVAVLSAALADREADSVARGLQIEELTALIR
EIEIDRAACGSQIEELTALIKEIEIDRAARGRQIEELTALIKEIEIDRAARGSQIEELTA
LIKEIEVNRAAQG