Protein Info for AMB_RS23085 in Magnetospirillum magneticum AMB-1

Annotation: glycosyltransferase family 2 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 PF13641: Glyco_tranf_2_3" amino acids 10 to 194 (185 residues), 51 bits, see alignment E=1.8e-17 PF00535: Glycos_transf_2" amino acids 11 to 187 (177 residues), 77.8 bits, see alignment E=1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb0057)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2WBB4 at UniProt or InterPro

Protein Sequence (345 amino acids)

>AMB_RS23085 glycosyltransferase family 2 protein (Magnetospirillum magneticum AMB-1)
MRPLPDQPLISVLIDTYYRPAMLRHAVEAIRGQTYADLDIVLIDNGSTPETKAVLAELEA
ADSRIRLVRFTENQFSWDDPHVIVRECYNAGLAAAKGDLVFHQADDDWLAPDFFERMVAL
FRENPACTTAIGVSVGVRPDGSEVSAAAANQRPRFMPGHEMALAVIDGKPVFGSPGFCFV
MRRDVLEAAGGFHDSFEQHMLYGIVAFGVTGFDSEARMYWGYHEGQLNKALRDRGWVSLG
YTRSLLDGFGLERRWAEAFGPAAARTVAEFIERQAYQSAAEIFAGCLAELRPAAIWRSFR
AAAPHLGFWKALPAELWEQKRLFAANLLKLVGLKPLLNRLRGRGV