Protein Info for AMB_RS19385 in Magnetospirillum magneticum AMB-1

Annotation: FlbT protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 163 PF07378: FlbT" amino acids 26 to 148 (123 residues), 137 bits, see alignment E=1.8e-44

Best Hits

Swiss-Prot: 33% identical to FLBT_RHILO: Probable flagellum biosynthesis repressor protein FlbT (flbT) from Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)

KEGG orthology group: K06601, flagellar protein FlbT (inferred from 100% identity to mag:amb3829)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0J2 at UniProt or InterPro

Protein Sequence (163 amino acids)

>AMB_RS19385 FlbT protein (Magnetospirillum magneticum AMB-1)
MPVVAGHGAWCHCRRHQRTECVALPLIIDLKPGEKLIINGAVLENASSNTKVRVLNDCSI
LRQKEILSDSDSVTPASRVYFALQCAYIFPTKRGEYLRMFNHYLDSYVEACPSASAIKDE
INEAVAEGHYYKALKATRHLLDHETKVLGSLQSVAAADAVVQD