Protein Info for AMB_RS18795 in Magnetospirillum magneticum AMB-1

Annotation: FAD-binding oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 469 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF01565: FAD_binding_4" amino acids 39 to 176 (138 residues), 128.9 bits, see alignment E=1.1e-41 PF02913: FAD-oxidase_C" amino acids 216 to 465 (250 residues), 180.3 bits, see alignment E=5.7e-57

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3713)

MetaCyc: 40% identical to trans-delta20-39-hydroxy-40-methyl-C60:1-[acp] oxidoreductase [multifunctional] (Mycobacterium tuberculosis H37Rv)
1.1.1.-; 1.1.-.-

Predicted SEED Role

"D-2-hydroxyglutarate dehydrogenase"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W0V8 at UniProt or InterPro

Protein Sequence (469 amino acids)

>AMB_RS18795 FAD-binding oxidoreductase (Magnetospirillum magneticum AMB-1)
MSILHALSAIVGPGNVITEASDLAPYLVEERGLYQGAALGVVRPGSTAEVAEVVRLCAAA
GIPMVPQGGNTGLCGGGVPSEDGQSVVISTERLTRIRAVDPVDFTLTAEAGCVLANLQQA
AEEAGCLFPLSLGAEGSCRIGGNISTNAGGTNVLRYGNTRDLVLGLEVVLPDGRVWNGLK
RLRKDNTGYALQHLFIGAEGTLGIVTACVLKLFPRPREIATAFVALADLEAALPLFSRAR
TASGDSVTACELVPRRGLELGMRHVPGVRAPFAAFHDWMLLLELSSSRPGGLREALEEML
GQAFEDGLAVDAVIAESDAQRADFWRIREAIPEAQKKEGGSIKHDVAVATSRVPEMIRRC
TRAVEAAMPGVRVVPFGHLGDGNTHFNLTQPEGADKAAFLARWEEMNRIVHDIVVEMEGS
ISAEHGIGRLKVDELAHYKPGVDLDLMARIKGALDPLGQMNPGKILRRP