Protein Info for AMB_RS16375 in Magnetospirillum magneticum AMB-1

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 409 transmembrane" amino acids 25 to 45 (21 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 91 to 111 (21 residues), see Phobius details amino acids 117 to 135 (19 residues), see Phobius details amino acids 155 to 180 (26 residues), see Phobius details amino acids 186 to 204 (19 residues), see Phobius details amino acids 225 to 250 (26 residues), see Phobius details amino acids 270 to 290 (21 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 386 to 404 (19 residues), see Phobius details PF05977: MFS_3" amino acids 21 to 404 (384 residues), 178.1 bits, see alignment E=2.6e-56 PF07690: MFS_1" amino acids 30 to 289 (260 residues), 78.1 bits, see alignment E=6.4e-26 amino acids 247 to 403 (157 residues), 39.2 bits, see alignment E=4.3e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3244)

Predicted SEED Role

"transporter, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W277 at UniProt or InterPro

Protein Sequence (409 amino acids)

>AMB_RS16375 MFS transporter (Magnetospirillum magneticum AMB-1)
MMTVMTDTHPSPKRRPWGHALRHPGYRLFFCGQAVSLMGSWMQMVAQSWLVYRLTGSAEM
LGLVAFVGQIPVFIFGLLGGAVADRVPRRRLILMTQGAFLLQAAGLAALTLAGWVQIWHV
LALAVLFGIINAVDIPARQAFTVDLVGKEDLGSAVALDASIFNAARLVAPALAGALVAAL
GEGWCFALNAVSFLGVIIALAVMAEPASATGGPAGESMLARVREGIAFVAGHGPILALMA
MLGLSGLMGMSFSVLMPVFADRVLAGGPEMLGLLMSAAGAGALAASLAVAGPMQGASRGR
VAWGLCAFGVALVAFALSRWGMLSMGLLALAGMALVAHNTASQILVQMLVPDAFRARTMA
LYSMTFMVATPSGSLLAGLLSERIGPQPTVALGGVACILGALAYRRWAP