Protein Info for AMB_RS15610 in Magnetospirillum magneticum AMB-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 transmembrane" amino acids 5 to 22 (18 residues), see Phobius details amino acids 36 to 61 (26 residues), see Phobius details amino acids 81 to 99 (19 residues), see Phobius details amino acids 111 to 138 (28 residues), see Phobius details amino acids 147 to 166 (20 residues), see Phobius details amino acids 213 to 231 (19 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 270 to 291 (22 residues), see Phobius details TIGR03476: putative membrane protein" amino acids 1 to 311 (311 residues), 371 bits, see alignment E=2.8e-115 PF03706: LPG_synthase_TM" amino acids 6 to 299 (294 residues), 63.7 bits, see alignment E=1e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb3101)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2M0 at UniProt or InterPro

Protein Sequence (326 amino acids)

>AMB_RS15610 hypothetical protein (Magnetospirillum magneticum AMB-1)
MKGNLLRLGLIALIIAVAWYMRDGFGDVGGALNTAGWTGVALMALTHALPVALCGVAWGL
LQDEVPTWKFSVARWIKDGVGELAGILPLSAEMAGIRLMTRYGFRVADASAIVMVDLTAE
AIAQFFFSILGVALWLHLYPEAEVTRWALIALGISVPGLAIFVALQRSVVMRFLETLPAK
IMPHAWDAPDADAGVHAAVNALYADHGRVARSVFWHILAWAAGAIEAWVALRLLGYPLGL
AEILALESIIYAIRSVAFVVPGAIGLQEGGYMLVGAVLGLPTEIALAVSLLKRGRELLMG
LPALFAWHYIEHATAKQKAPAEKTGA