Protein Info for AMB_RS15035 in Magnetospirillum magneticum AMB-1

Annotation: DUF2189 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 transmembrane" amino acids 38 to 59 (22 residues), see Phobius details amino acids 65 to 85 (21 residues), see Phobius details amino acids 117 to 140 (24 residues), see Phobius details amino acids 162 to 187 (26 residues), see Phobius details amino acids 216 to 244 (29 residues), see Phobius details PF09955: DUF2189" amino acids 66 to 191 (126 residues), 129.1 bits, see alignment E=5.6e-42

Best Hits

KEGG orthology group: None (inferred from 100% identity to mag:amb2986)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q2W2Y5 at UniProt or InterPro

Protein Sequence (258 amino acids)

>AMB_RS15035 DUF2189 domain-containing protein (Magnetospirillum magneticum AMB-1)
MISMAIHTHHPDVRLVTPAQAAEWLNAGWRDVWRNPGLSLGFGAVYAAIGMGLFLVLNVL
DMGSLLLPLAAGFMLVGPLAAVFLYEISRRTEAGEVVDLGRVVGGVTSRLDQVGNMGLVL
SILLMAWLLAGLVVFALFYPPGMPLPLGNFIEDVVLRPESFRFLTVGTLVGGVLAVIAFS
ISVFAMPMLLDRDVSVIEAMEFSVDAVRVNWRTMIGWAATIAVVTFFGMATAFVGMIVAL
PVVAHASWHAYRDVMGRH